Welcome to scConnect’s documentation!

Report issues to jon.jakobsson@neuro.uu.se. If this software is useful to your research, please cite pending publication.

Contents:

• Work flow
  • Building the database
  • Working with AnnData objects and Scanpy
  • Make gene calls
  • Deciding what to connect
  • Building the graph
  • Analysing the graph
• API
  • Database
  • Gene calls
  • Connect
  • Graph

Indices and tables

• Index
• Module Index
• Search Page